PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang0039ss01010.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family MYB_related
Protein Properties Length: 171aa    MW: 19321.4 Da    PI: 10.0419
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang0039ss01010.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.21.6e-0787134246
                        SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
    Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 
                        g+W++ + + + +a + + ++   +W  +a+ +g g+t++++k ++  
  Vang0039ss01010.1  87 GSWSAKDNKAFERALAVYDKDtpdRWYNVAKAVGGGKTPEEVKRHYEL 134
                        89*******************************************975 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.55184140IPR017884SANT domain
SMARTSM007171.9E-885138IPR001005SANT/Myb domain
PfamPF002496.4E-686133IPR001005SANT/Myb domain
SuperFamilySSF466898.16E-1287144IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.9E-588137IPR009057Homeodomain-like
CDDcd001670.0014595136No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MCLNSTQLFL LSRFAFQLAL PHFKLSTSGY KRSTHCFLSS VSVHLPIPWC LVLLTQSFLL  60
FLNTIIPKLF ANHCLLQMAS SSMSSTGSWS AKDNKAFERA LAVYDKDTPD RWYNVAKAVG  120
GGKTPEEVKR HYELLLRDVR HIESGQVPFP NYKQSGGSQE EKRLRNLKLQ *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-4080170293RADIALIS
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014500868.12e-64PREDICTED: protein RADIALIS-like 1
SwissprotQ58FS31e-40RAD_ANTMA; Transcription factor RADIALIS
TrEMBLA0A0S3SIU82e-64A0A0S3SIU8_PHAAN; Uncharacterized protein
STRINGGLYMA06G46590.12e-48(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39250.17e-38RAD-like 1